Medical Practice Financial Management

Eric Morgan

Eric Morgan


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Medical Office Accounting Software Information

One of the key components of a successful medical practice is the maintenance of accurate financial records. Medical practice accounting is much more than a chore that must be attended to in order to file annual tax returns—if done correctly; it can provide information useful for evaluating performance and for making decisions that have day-to-day and long-term implications.

Although this article focuses on Intuit’s QuickBooks accounting software for medical practices, many of our clients use other products such as (a web-based medical office accounting software). Most accounting products share similar feature sets, and so the information in this article can be easily applied to a variety of software.

Using Class Systems for Multi-Practitioner Offices

Many medical practices find the class system in QuickBooks to be very helpful. In a multi-practitioner medical office, the class system can be used to segregate revenues and expenses between providers. This is done by setting up a class code for each provider and then assigning a code to each revenue and expense transaction. You can then run a special Profit and Loss by Class report with columns that show the revenues and expenses that pertain to each provider. also provides a similar feature called “Categories” that works in the same way.

Budgeting with Medical Accounting Software

Being able to compare your expectations for the performance of your practice versus what actually happened is also essential. QuickBooks and both have the ability for you to enter budget amounts for the accounts you have set up and then provide various reports that allow you to compare actual results against your budget. This feature can be useful as a basis for determining rewards in employee incentive programs and for defining spending limits for administrative staff.

Bank Reconciliation

One of the most important things you can do to make sure you are capturing all transactions correctly is to make use of the Bank Reconciliation feature for each bank account active in the software. Using the Bank Reconciliation feature in your accounting software is similar to balancing your personal checkbook. It assists you with verifying that the transactions you have input into the bank accounts match the bank statements you receive. Performing monthly bank reconciliations will help ensure that the bank balances shown in the software are an accurate representation of the available cash on hand for operation of the practice.

If you find it burdensome to record each individual transaction, most medical office accounting software will allow you to download bank account and credit card activity from many financial institutions directly into the software. However, if you choose to do this, it will still be necessary to classify the nature of each transaction that is downloaded. For example, if you link your practice’s bank account to your software and then download a debit card transaction in which you purchased disposable plastic gloves, you will probably want to tell your software that the purchase was for “Medical Supplies” expense. In addition, you will be able to match transactions you have entered manually if they duplicate a transaction downloaded from the bank.

Benefits of Accounting for Medical Practices

One of the primary reasons that doctors should keep detailed accounting records is to be able to produce the necessary information for the annual filing of tax returns. Many of BiggsKofford’s physician clients submit a QuickBooks file or allow us to access their account so that we have the information we need to prepare the return. Prior to providing this information to us, there are a number of things you can do that will help reduce the amount of time and fees for tax return preparation. First, run the report that shows your Balance Sheet on the final day of the tax period. Examine the balances of each account. Do the balances seem reasonable? Do you see anything that is clearly wrong or that your CPA would question? If so, take a look at the activity in the account for that year and correct any errors that you encounter. Do the same for the Profit and Loss report for the period the tax return will cover.

Despite the fact that most consumer accounting software such as QuickBooks is designed for users without an accounting background, they can still seem overwhelming if you are not familiar with them. Even experienced users often encounter situations in which they are not sure how to proceed. BiggsKofford’s goal is to effectively support our physician clients in the use of their accounting software so they have the information necessary for successfully medical practice financial management.

If you have any questions about medical accounting software or the services we can provide for your practice, please contact Eric Morgan at BiggsKofford CPA:

Call: (719) 579-9090       Email:

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